PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g35290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 213aa    MW: 23838.3 Da    PI: 4.9343
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g35290genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-16111161255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  Tp6g35290 111 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDVDAARAYDCAAFKLRG 161
                7********.**********954..34**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-31110170IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-22111170IPR016177DNA-binding domain
SMARTSM003808.3E-36111175IPR001471AP2/ERF domain
PROSITE profilePS5103224.487111169IPR001471AP2/ERF domain
PfamPF008472.9E-11111161IPR001471AP2/ERF domain
CDDcd000181.16E-29111169No hitNo description
PRINTSPR003674.0E-13112123IPR001471AP2/ERF domain
PRINTSPR003674.0E-13151171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MATFEESSDL QKHLFEDFMV SDGFMGDFDF DASFVSGLLC IEPVMNQVPK QEPDSPVLDA  60
DSFVKAFLQV EAESSTSTGI SELNSSSHET DQSVSTRKKP KRFEEEEEPR HYRGVRRRPW  120
GKFAAEIRDP AKKGSRIWLG TFESDVDAAR AYDCAAFKLR GRKAVLNFPL DAGKYEAPTN  180
SGRKRKRSGV QEELQRSQSN SSSSSSDGET ICE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-28110170161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507110.0AY350711.1 Sisymbrium irio clone BAC Sio11E11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122325.11e-121PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF106, partial
RefseqXP_013715722.11e-122PREDICTED: ethylene-responsive transcription factor ERF106-like
SwissprotQ9LY051e-105EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLQ6V5I21e-128Q6V5I2_SISIR; AP2 transcription factor
STRINGBra009250.1-P1e-122(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.19e-97ERF family protein